ALERT

In observance of the upcoming holidays, Agilent Cross Lab iLab Operations Software will be closed during US hours on Monday December 25th, 2017 and Monday January 1st, 2018. EU and APAC will be closed on Tuesday December 26th, 2017. During the week, we will have limited support hours and resume regular support hours on Tuesday January 2nd, 2018. For urgent matters, please add "URGENT" to the ticket subject and these requests will be prioritized first.

 

 

To submit a help ticket with iLab, click on the HELP link to access the support portal. If you are unable to access the support portal, email ilab-support@agilent.com and this will create a ticket. iLab Support can also provide you with access to the support portal.

Bioinformatics Shared Resource (La Jolla)

Getting Started

Internal SBPMDI

  • If you have an iLab account, please login at the top right or use this link https://ilab.sbpdiscovery.org/
  • If you do not have an iLab account, please click HERE to request an account. All fields are required.

 

External SBPMDI

  • You must have a Customer ID and iLab account to request services from this facility.
  • To obtain a Customer ID please email Eveline Hernandez at ehernandez@sanfordburnham.org
  • To obtain an iLab account, please click HERE.


Forgot your password? Please click HERE.

 

Overview of Services

The Bioinformatics Shared Resource (BSR) is a member of the Cancer Center Shared Resources. Our mission is to provide bioinformatics services to the other Shared Resources and to individual researchers throughout the Institute. Our services span the entire field of bioinformatics from Next-Gen Sequencing Data Analysis, pathway modelling, and microarray analysis to high-throughput screening and data management.

 

Our services includes (but not limited to):

  • Next-Generation Sequencing data analysis: from reads to biology (RNA-Seq, ChiP-Seq, DNA-seq, exome sequencing, targeted resequencing, SNP and indel detection and more)   
  • Statistical analysis, e.g., power analysis and calculation of the optimum number of animals needed for the experiment
  • De-novo network discovery and identification of master regulator genes with Viper-KR, Bayesian networks, and related tools
  • Systems biology support and pathway analysis (via GeneGO, IPA and NextBio)
  • Microarray, metabolomics, proteomics, methylation, and/or drug data analysis (from raw signals to biology/hypothesis verification); individual and/or integrative approaches
  • Genome and gene family analysis and annotation (e.g., promoter and transcription factor binding site identification: Transfac & public tools)
  • Custom applications developments and tool support
  • Bioinformatics classes and training
  • Grant and paper preparation assistance
  • Website and database development

Support for the BSR comes from three sources: 

  • Participation in PIs grants
  • Cancer Center Support Grant
  • Chargebacks
       

Pricing Schedule                Hourly rates

SBMRI Cancer Center and                 
La Jolla Neuroscience Center    $38.00    
External Non-Profit                   $51.00    
External Commercial                 $97.7.05    

Accounts on IPA (Ingenuity), MetaCore (GeneGo) and NextBio (NextBio)

We have Institute-wide subscription to Systems biology tools IPA, MetaCore and NextBio. To get access to any of those tools please follow instructions at bsrweb.burnham.org

 

Leadership/Group Members

Alexey M. Eroshkin Ph.D. | BSR Director and Bioinformatics Specialist

aeroshkin@sbpdiscovery.org

(858)646-3100 x4784

3010 Science Park Dr, San Diego, CA 92121

Room 2406, Building 10

 

Andrew Hodges, Ph.D. | Bioinformatics Specialist

ahodges@sbpdiscovery.org

(858) 646-3100 x4223

Room 2405, Building 10

 

Vicky Guo | Support Bioinformatics Programmer

 vguo@sbpdiscovery.org

(858) 646-3100 x4760

Room 2405, Building 10

 

Location and hours of operation

Hours Location

Monday - Friday

8:30AM - 5:30PM

Excluding Holidays     

Room 2405, Building 10

La Jolla, California 92121

Links and Resources

    1. www.sbpdiscovery.org
    2. Bioinformatics Internal Site – link to “http://intranet/researchsupport/sr/bioinformaticsLJ/Pages/Home.aspx”
    3. Bioinformatics Public Site (managed by the group)
    4. http://regulattice.sbpdiscovery.org (internal http://regulattice.burnham.org)
    5. http://samplesurfer.sbpdiscovery.org – Sample Surfer (internal http://samplesurfer.burnham.org)
    6. www.proteolysis.org - proteolysis reasoning environment
    7. www.bNAber.org - database of HIV-1 broadly neutralizing antibodies

Contacts

Name Role Phone Email Location
Alexey M. Eroshkin Ph.D.
BSR Director and Bioinformatics Specialist
 
(858) 795-5336
 
eroshkin@sanfordburnham.org
 
Room 2406, Building 10